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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102695878_102696315_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102695878 - 102696315
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CATTACTGTATT
Flanking Amino Acid:
KILAFDVEQLIQDIFQASIL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74.3
34.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.4
0.75
0.9
79.2
32.9
Minor 5ss
34.9
-1.7
2.9
42.4
38.2
Minor BPS
47.5
-0.1
2
66.96
43.7

Associated Gene:

Gene:
TMPRSS15
Ensembl Gene ID:
ENSAPLG00000007563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007888
102644326 - 102698651
54326