About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102714638_102716296_R


Intron Information:

Intron Rank:
146451

Intron Class:
major

Intron Phase:

Intron Coordinates:
102714638 - 102716296

Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTCTGAATG

5'SS Class:
major

3'SS Sequence:
TATATATCTACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TAATGAT

U12 Branch Point Sequence:
ATATATCTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.5
0.46
1.3
68.1
42.8

Major BPS
76.8
0.67
1
66
40.9

Major PPT
77.4
0.62
0.9
70.1
40.1

Minor 5ss
38.6
-1.3
2.8
49
46.8

Minor BPS
56.9
0.29
1.8
77.36
38.4

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

102713806 - 102793515
79710