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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102716379_102719648_R

Intron Information:

Intron Rank:
146450
Intron Class:
major
Intron Phase:
Intron Coordinates:
102716379 - 102719648
Intron Length:
3270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
GTGCAATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
85.4
0.8
0.6
85.2
22.2
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
43.1
-0.4
1.9
59.58
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026141
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023874
102716149 - 102719857
3709