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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102716379_102720908_R

Intron Information:

Intron Rank:
146452
Intron Class:
major
Intron Phase:
Intron Coordinates:
102716379 - 102720908
Intron Length:
4530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
GTGCAATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
85.4
0.8
0.6
85.2
22.2
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
43.1
-0.4
1.9
59.58
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026141
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031125
102713806 - 102793515
79710