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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1028149_1028928_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1028149 - 1028928
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCGAA
5'SS Class:
major
3'SS Sequence:
TCTTGTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TTTTTCTTGTTC
Flanking Amino Acid:
SLKMILALAGERFLRVELLS
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.5
38.7
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
78.2
0.63
0.8
77.2
31.6
Minor 5ss
35.2
-1.7
3.3
38
46.9
Minor BPS
47.9
-0.1
3.4
76.61
34.1

Associated Gene:

Gene:
FBH1
Ensembl Gene ID:
ENSAPLG00000009754
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010201
1009974 - 1030196
20223