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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102838109_102842761_R

Intron Information:

Intron Rank:
149648
Intron Class:
major
Intron Phase:
Intron Coordinates:
102838109 - 102842761
Intron Length:
4653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTCCAATTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
42.8
-0.4
2.2
63.58
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028043
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037862
102837982 - 102843033
5052