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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102839420_102842761_R

Intron Information:

Intron Rank:
149650
Intron Class:
major
Intron Phase:
Intron Coordinates:
102839420 - 102842761
Intron Length:
3342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCACATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATTTCCACATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
72.8
0.51
0.9
65.7
34.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
52.9
0.17
2.1
80.18
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028043
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046916
102839149 - 102846762
7614