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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_102843034_102846126_R

Intron Information:

Intron Rank:
149652
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
102843034 - 102846126
Intron Length:
3093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
AATCCCAAAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
51.8
0.04
1
45.9
34.5
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028043
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046916
102839149 - 102846762
7614