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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10318237_10320434_F

Intron Information:

Intron Rank:
129974
Intron Class:
major
Intron Phase:
Intron Coordinates:
10318237 - 10320434
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTTTATACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.4
0.57
0.8
70.5
34.6
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
51.7
0.05
1.8
68.72
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019939
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036341
10278177 - 10321191
43015