Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10320716_10322846_F

Intron Information:

Intron Rank:

129971

Intron Class:

major

Intron Phase:

Intron Coordinates:

10320716 - 10322846

Intron Length:

2131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGACA

5'SS Class:

strong_major

3'SS Sequence:

GCTTTAATTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

CTTGCTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

74.7

35.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

76.6

0.6

0.9

66.9

42.9

Minor 5ss

31.9

-2.1

3.1

40.7

45.3

Minor BPS

73.1

0.8

1.3

82.98

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027797

10278177 - 10322999

44823