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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103274242_103291485_F

Intron Information:

Intron Rank:
129748
Intron Class:
major
Intron Phase:
Intron Coordinates:
103274242 - 103291485
Intron Length:
17244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTGAACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
69.9
40.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.9
0.49
1
67.7
42.7
Minor 5ss
39.8
-1.1
3.4
59.5
44.9
Minor BPS
77.1
0.93
1.3
92.31
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019828
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024974
103273336 - 103291898
18563