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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103433778_103434943_F

Intron Information:

Intron Rank:
148079
Intron Class:
major
Intron Phase:
Intron Coordinates:
103433778 - 103434943
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATC
5'SS Class:
major
3'SS Sequence:
CCTCCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATTAAAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
80
32.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.2
0.7
0.7
79.4
26.1
Minor 5ss
48.8
-0.1
2.5
67.5
36.5
Minor BPS
43.1
-0.5
2
55.37
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018750
103431076 - 103434982
3907