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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103542729_103543583_R

Intron Information:

Intron Rank:
130858
Intron Class:
major
Intron Phase:
Intron Coordinates:
103542729 - 103543583
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTGTTCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
76.6
0.6
1
73
37.5
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
62.5
0.39
1.7
74.62
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035529
103542631 - 103602523
59893
ENSAPLT00000019206
103542631 - 103543746
1116