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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103543658_103602478_R

Intron Information:

Intron Rank:
130860
Intron Class:
major
Intron Phase:
Intron Coordinates:
103543658 - 103602478
Intron Length:
58821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTGATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.6
0.78
0.7
79.9
32.3
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
55.5
0.17
1.7
68.58
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035529
103542631 - 103602523
59893