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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103620562_103628960_R

Intron Information:

Intron Rank:
130441
Intron Class:
major
Intron Phase:
Intron Coordinates:
103620562 - 103628960
Intron Length:
8399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TATTGATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGATCATAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.8
0.67
0.9
70.3
44.5
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
53
0.09
1.9
66.35
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023347
103618650 - 103629831
11182