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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103625549_103628532_R

Intron Information:

Intron Rank:
130438
Intron Class:
major
Intron Phase:
Intron Coordinates:
103625549 - 103628532
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTCTCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73.9
0.54
0.9
70.5
33.7
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
68.6
0.66
1.4
82.07
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017315
103618650 - 103629831
11182