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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103628632_103628960_R

Intron Information:

Intron Rank:
130439
Intron Class:
major
Intron Phase:
Intron Coordinates:
103628632 - 103628960
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTACTTAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
71.5
0.48
1
67.6
37.6
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
63.5
0.51
1.7
83.66
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017315
103618650 - 103629831
11182