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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10364426_10429091_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10364426 - 10429091
Intron Length:
64666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TTTACTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTATTTACTA
Flanking Amino Acid:
PQARVFLSFNELQETKTSEY
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
64.3
41.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.6
0.78
0.8
82
34.1
Minor 5ss
31.4
-2.1
3.1
36.3
41.6
Minor BPS
54.6
0.14
1.8
67.55
39.7

Associated Gene:

Gene:
SEMA3C
Ensembl Gene ID:
ENSAPLG00000003901
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004111
10361110 - 10480991
119882