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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103835093_103981264_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103835093 - 103981264
Intron Length:
146172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
TTATATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CATACTTTATAT
Flanking Amino Acid:
LLGLLLSSGQALLQVTISLS
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87
0.83
0.8
85
35
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
50.2
0.08
1.7
67.05
43.5

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255