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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103981340_103982095_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103981340 - 103982095
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTACTTTAATT
Flanking Amino Acid:
VGESKFFTCTAIGEPDTIDW
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
77.4
0.94
1.1
87.04
32.2

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255