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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103988904_103990669_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103988904 - 103990669
Intron Length:
1766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATATCCAGACCC
Flanking Amino Acid:
DFRDIIVIVNGSFFKFDPMY
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.6
0.82
0.6
85.4
22
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
48
-0.1
2
64.06
40.7

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035749
103835041 - 104117295
282255