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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_103990766_103992417_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103990766 - 103992417
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAATTGTC
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCCATTACT
Flanking Amino Acid:
PRRTYKKNISFPPAITLPQK
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
74.5
34
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
39.7
-1.1
3.4
57.2
40.7
Minor BPS
71.3
0.75
1.9
93.77
33.6

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035749
103835041 - 104117295
282255