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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104005375_104026882_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104005375 - 104026882
Intron Length:
21508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
TCAATGTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TTTTCCTGAATC
Flanking Amino Acid:
DGITFSEGDKSPDGRIEVKG
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
60
0.23
1.1
54.7
43.7
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
81
0.95
1.2
87.53
28.7

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009743
103835041 - 104117295
282255
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255