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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104027034_104041395_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104027034 - 104041395
Intron Length:
14362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTGTATTACTT
Flanking Amino Acid:
HQKSMYLDIEYAPTFVSNQT
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
86
0.81
0.8
83.8
31.2
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
48.2
-0
1.9
68.96
42.4

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255