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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104041584_104044889_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104041584 - 104044889
Intron Length:
3306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATATTTTCAAAT
Flanking Amino Acid:
YSAGRKLILEIAPTSDSDFG
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71.6
0.49
1.1
71.2
37.9
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
55.8
0.26
1.6
72.55
38

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009743
103835041 - 104117295
282255
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255