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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104044987_104055699_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104044987 - 104055699
Intron Length:
10713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTACTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGATTATTAAAT
Flanking Amino Acid:
RYQEYTLGQADVPSNPYGVR
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.8
0.63
0.9
69.8
41.4
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
59.8
0.39
1.7
76.29
39.4

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255