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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104055874_104070406_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104055874 - 104070406
Intron Length:
14533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
GTTTCTGTATTT
Flanking Amino Acid:
WKIVRSHGVQTMVVLSNLEP
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
78.6
0.64
0.7
76.9
25.2
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
50.6
0.1
2.2
76.04
41.4

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255
ENSAPLT00000043194
103835041 - 104090684
255644