About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104070527_104072412_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104070527 - 104072412
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTCATTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
KIEIFQTLPVREPSPPSIHG
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.3
74.4
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
0.9
73.9
35.5
Minor 5ss
33.8
-1.8
2.9
46.9
41.8
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009743
103835041 - 104117295
282255
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255