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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104072535_104080042_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104072535 - 104080042
Intron Length:
7508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TGCATCTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTGAGAATT
Flanking Amino Acid:
ILEYIVKYRSKDKEDQWLEK
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.9
0.65
0.9
72.1
37.9
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
47.7
-0.1
2.3
77.25
39.5

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043194
103835041 - 104090684
255644
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255