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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104080224_104090577_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104080224 - 104090577
Intron Length:
10354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTATAACA
Flanking Amino Acid:
SMPPKPNIITERCCEDTRRE
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
100
1.24
0.5
100
0
Major PPT
71.5
0.48
0.9
65.4
35.3
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
77.3
0.85
1.5
88.36
28.3

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043194
103835041 - 104090684
255644