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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104080224_104105917_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104080224 - 104105917
Intron Length:
25694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGTTATTAATA
Flanking Amino Acid:
SMPPKPNIITDTLFNGLGLR
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80
0.68
1
79.1
33.3
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
63
0.4
1.5
70.38
36

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255