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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104106123_104111840_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104106123 - 104111840
Intron Length:
5718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TAACAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTCTTCTAACA
Flanking Amino Acid:
KELEEGKAAYLKDGSKEPIV
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
67.3
0.39
1
63.3
42.3
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
51
0.03
1.7
61.67
38.4

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255