About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104111961_104117183_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104111961 - 104117183
Intron Length:
5223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGTTTTGTAACT
Flanking Amino Acid:
PNETTPLTEPEKLPLKEENG
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.9
41.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
78.7
0.64
0.9
76.8
32
Minor 5ss
37.4
-1.4
2.7
42.4
38.3
Minor BPS
63.2
0.49
2
83.79
37.4

Associated Gene:

Gene:
NCAM2
Ensembl Gene ID:
ENSAPLG00000009276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035749
103835041 - 104117295
282255
ENSAPLT00000009743
103835041 - 104117295
282255