About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104148983_104149970_F

Intron Information:

Intron Rank:
150852
Intron Class:
major
Intron Phase:
Intron Coordinates:
104148983 - 104149970
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTTACATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
70.8
39.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.5
0.69
0.8
78.3
35
Minor 5ss
44.7
-0.6
2.8
60.1
38.2
Minor BPS
53.5
0.19
1.7
70.57
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031065
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047667
104148878 - 104159158
10281