About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104150121_104158225_F

Intron Information:

Intron Rank:
150853
Intron Class:
major
Intron Phase:
Intron Coordinates:
104150121 - 104158225
Intron Length:
8105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
63.7
39
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
83.9
0.76
0.8
82
28.5
Minor 5ss
43.9
-0.7
2.8
55.7
48.5
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031065
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047667
104148878 - 104159158
10281