About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10429253_10431699_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10429253 - 10431699
Intron Length:
2447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
INNISQDPLSIFWPASANKV
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
70.6
36.1
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
42.5
-0.8
2.7
51.5
44.9
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
SEMA3C
Ensembl Gene ID:
ENSAPLG00000003901
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004111
10361110 - 10480991
119882