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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104297492_104368519_F

Intron Information:

Intron Rank:
131022
Intron Class:
major
Intron Phase:
Intron Coordinates:
104297492 - 104368519
Intron Length:
71028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGAG
5'SS Class:
major
3'SS Sequence:
ATTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
ATTACCTTGACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60
40.8
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
87.6
0.85
0.7
85.2
28.8
Minor 5ss
21.7
-3.3
3.4
27.2
44.5
Minor BPS
73.5
0.59
1.4
74.12
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040638
104297417 - 104434905
137489