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Intron Name: Anas_platyrhynchos_platyrhynchos_1_10436694_10440609_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10436694 - 10440609

Intron Length:

3916

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATCTC

5'SS Class:

strong_major

3'SS Sequence:

ATTTACATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

GTTTCTAAAATG

Flanking Amino Acid:

VYVNRGRRSEEQIFKIDSKC

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

78.6

35.9

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

78.3

0.64

0.9

71.3

38.5

Minor 5ss

38.1

-1.3

3.1

52.9

44.3

Minor BPS

49.1

-0.2

60.65

41.7

Associated Gene:

Gene:

SEMA3C

Ensembl Gene ID:

ENSAPLG00000003901

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004111

10361110 - 10480991

119882