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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104404250_104417571_F

Intron Information:

Intron Rank:
131011
Intron Class:
major
Intron Phase:
Intron Coordinates:
104404250 - 104417571
Intron Length:
13322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTGGCA
5'SS Class:
major
3'SS Sequence:
TCCTATTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GTGTAAGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.2
37.2
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
66.9
0.38
1.1
63.7
41.5
Minor 5ss
35.7
-1.6
3.5
47.9
47.7
Minor BPS
45.1
-0.2
2.3
66.85
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020144
104403237 - 104417624
14388