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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104421427_104422832_F

Intron Information:

Intron Rank:
131016
Intron Class:
major
Intron Phase:
Intron Coordinates:
104421427 - 104422832
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTGTTGTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.1
0.72
0.8
80.8
31.3
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
48.1
-0
2.1
67.6
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030844
104421208 - 104453815
32608