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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104423006_104431739_F

Intron Information:

Intron Rank:
131017
Intron Class:
major
Intron Phase:
Intron Coordinates:
104423006 - 104431739
Intron Length:
8734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
ATTTCTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
81
0.7
0.7
76.8
31.2
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
66.4
0.51
1.7
77.18
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037429
104419571 - 104453815
34245
ENSAPLT00000030844
104421208 - 104453815
32608