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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10446295_10448300_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10446295 - 10448300
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGAACT
5'SS Class:
major
3'SS Sequence:
TATTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAAAA
Flanking Amino Acid:
IHSMIARICPNDTGGQRSLV
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
72.2
37.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.8
0.81
0.8
77.5
36.4
Minor 5ss
38.3
-1.3
3.1
56.8
41
Minor BPS
66.9
0.53
1.7
80.08
35.8

Associated Gene:

Gene:
SEMA3C
Ensembl Gene ID:
ENSAPLG00000003901
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004111
10361110 - 10480991
119882