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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10448416_10450753_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10448416 - 10450753
Intron Length:
2338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAGCAA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
DGTETYFDELEDVFLLETDN
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
60.8
39.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.82
0.8
80.6
36.1
Minor 5ss
35.5
-1.6
3.3
46.5
48.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
SEMA3C
Ensembl Gene ID:
ENSAPLG00000003901
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004111
10361110 - 10480991
119882