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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10450824_10453701_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10450824 - 10453701
Intron Length:
2878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AAGATATTAACT
Flanking Amino Acid:
TLVYGIFTTSSSIFKGSAVC
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80.9
0.7
0.8
73.5
37.1
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
55.9
0.26
1.6
69.52
40.8

Associated Gene:

Gene:
SEMA3C
Ensembl Gene ID:
ENSAPLG00000003901
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004111
10361110 - 10480991
119882