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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10475241_10478383_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10475241 - 10478383
Intron Length:
3143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTATAA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTATTCTGACCT
Flanking Amino Acid:
LTQCRGFNLKAYRNAAETVQ
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
66.9
34.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88.1
0.86
0.6
81.5
30.4
Minor 5ss
36.3
-1.6
3.2
47.5
47.9
Minor BPS
61.8
0.45
1.7
81.41
40

Associated Gene:

Gene:
SEMA3C
Ensembl Gene ID:
ENSAPLG00000003901
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004111
10361110 - 10480991
119882