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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_104857400_104858968_F

Intron Information:

Intron Rank:
133437
Intron Class:
major
Intron Phase:
Intron Coordinates:
104857400 - 104858968
Intron Length:
1569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
88.3
0.86
0.7
84
30.3
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
64.8
0.46
1.7
76.76
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027569
104856038 - 104859061
3024