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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10507156_10507930_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10507156 - 10507930
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
NLLVKPAKKIEALSKVKKPY
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.2
0.77
0.8
81.5
28.8
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
CD36
Ensembl Gene ID:
ENSAPLG00000004563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004725
10506032 - 10540154
34123