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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10508005_10509284_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10508005 - 10509284
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTCATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATG
Flanking Amino Acid:
EHETFLDVEPTTGFTLQFAK
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
64.9
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
0.9
77.4
36.6
Minor 5ss
37.4
-1.4
3
52.6
43.7
Minor BPS
60.3
0.18
1.8
69.97
38.4

Associated Gene:

Gene:
CD36
Ensembl Gene ID:
ENSAPLG00000004563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004725
10506032 - 10540154
34123