About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10509404_10510130_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10509404 - 10510130
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGCAG
5'SS Class:
major
3'SS Sequence:
CTTTTTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAAAT
Flanking Amino Acid:
GVLDISACKGGRPVYISLPH
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
55.5
43.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73
0.52
0.9
70.8
33.8
Minor 5ss
35.5
-1.6
3.3
46.2
49.1
Minor BPS
59.8
0.39
1.6
76.7
40.1

Associated Gene:

Gene:
CD36
Ensembl Gene ID:
ENSAPLG00000004563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004725
10506032 - 10540154
34123