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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10510319_10512016_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10510319 - 10512016
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TCCTCTTTTATA
Flanking Amino Acid:
VLRFFSSDICRSIYGVFQGK
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
75.2
37.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
83.5
0.75
0.9
81.9
33.7
Minor 5ss
38.5
-1.3
3
50
46.2
Minor BPS
59.8
0.3
1.6
66.19
40.9

Associated Gene:

Gene:
CD36
Ensembl Gene ID:
ENSAPLG00000004563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004725
10506032 - 10540154
34123